Class ConsensusTree

java.lang.Object

ScoredTree

ConsensusTree

public class ConsensusTree
extends ScoredTree

Constructor Summary

Constructors

Constructor and Description
ConsensusTree(int index, java.util.ArrayList<Tree> allTrees) creates a consensus tree and calculates the score of each node

Method Summary

Methods

Modifier and Type	Method and Description
Element	checkForNodes(int x, int y, org.eclipse.swt.widgets.Canvas can) checks if there is a node at the position defined by x and y on the canvas.
void	draw(org.eclipse.swt.widgets.Canvas can, OurColormap colormap) draws the consensus tree onto the provided canvas using the provided colors
void	markNodes(Element referenceElement, org.eclipse.swt.widgets.Canvas can) highlights the nodes on the consensus tree, that are equal to the passed reference tree and its children

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ConsensusTree

public ConsensusTree(int index,
             java.util.ArrayList<Tree> allTrees)

creates a consensus tree and calculates the score of each node

Parameters:

index - index of the consensus tree in the tree list

allTrees - all trees

Method Detail

draw

public void draw(org.eclipse.swt.widgets.Canvas can,
        OurColormap colormap)

draws the consensus tree onto the provided canvas using the provided colors

Parameters:

can - canvas on which the tree will be drawn

colormap - color palette to be used to code the scores

checkForNodes

public Element checkForNodes(int x,
                    int y,
                    org.eclipse.swt.widgets.Canvas can)

checks if there is a node at the position defined by x and y on the canvas. if a node can be found, the corresponding element will be returned and the node and its children will be highlighted

Parameters:

x - x coordinate

y - y coordinate

can - canvas

Returns:

element at the position defined by x and y, if one is found

markNodes

public void markNodes(Element referenceElement,
             org.eclipse.swt.widgets.Canvas can)

highlights the nodes on the consensus tree, that are equal to the passed reference tree and its children

Parameters:

referenceElement - node of interest

can - canvas