Class ComparisonTree

java.lang.Object

ScoredTree

ComparisonTree

public class ComparisonTree
extends ScoredTree

Constructor Summary

Constructors

Constructor and Description
ComparisonTree(Tree consensusTree, Tree tree) creates a comparison tree and calculates the score of each node using the consensus tree

Method Summary

Methods

Modifier and Type	Method and Description
void	draw(org.eclipse.swt.widgets.Canvas can, OurColormap colormap, int startx1, int starty1, int endx, int endy) draws the comparison tree on the provided canvas into the field whose boundaries are given by the x and y values
void	markNodes(Element referenceElement, org.eclipse.swt.widgets.Canvas can, int startx1, int starty1, int endx, int endy) highlightes the nodes, which are equal to the reference element or its children

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ComparisonTree

public ComparisonTree(Tree consensusTree,
              Tree tree)

creates a comparison tree and calculates the score of each node using the consensus tree

Parameters:

consensusTree - consensus tree to calculate the scores

tree - comparison tree

Method Detail

draw

public void draw(org.eclipse.swt.widgets.Canvas can,
        OurColormap colormap,
        int startx1,
        int starty1,
        int endx,
        int endy)

draws the comparison tree on the provided canvas into the field whose boundaries are given by the x and y values

Parameters:

can - canvas on which the tree will be drawn

colormap - color pallete to be used to encode the scores

startx1 - x1

starty1 - y1

endx - x2

endy - y2

markNodes

public void markNodes(Element referenceElement,
             org.eclipse.swt.widgets.Canvas can,
             int startx1,
             int starty1,
             int endx,
             int endy)

highlightes the nodes, which are equal to the reference element or its children

Parameters:

referenceElement - reference element

can - canvas

startx1 - x1

starty1 - y1

endx - x2

endy - y2